Contact

Created by

Hubert Santuz
Benoist Laurent
Chantal Prévost
Charles Robert

Address

Laboratoire de Biochimie Théorique
UPR 9080 CNRS
Institut de Biologie Physico-Chimique
13 rue Pierre et Marie Curie
75005 Paris, France
computer www-lbt.ibpc.fr/

Support & Troubleshooting

If you have found issues or bugs, have questions, or would like to suggest improvements, you can:

  • Use the Issue Tracker of the repository.
  • Send us an email to this address: hubert.santuz[at]ibpc.fr

Sources

The source code of the webserver is available on Github: https://github.com/ptools/heligeom_webserver and archived in Software Heritage (swh:1:dir:af308bc8009c2d889d6cd42c29198ecb50e7fd25).

This webserver relies on a library called Ptools (1-2) whose source code is available here: https://github.com/ptools/ptools.

The molecule viewer plugin used on this website is based on Mol* Viewer (3).

Citation

If you use the Heligeom webserver, please cite:

Santuz H, Laurent B, Robert CH, and Prévost C (2025) Heligeom: A web resource to generate, analyze, and visualize filament architectures based on pairwise association geometries of biological macromolecules. Journal of Molecular Biology. https://doi.org/10.1016/j.jmb.2025.169019

References

  1. Boyer B, Ezelin J, Poulain P, Saladin A, Zacharias M, Robert C H, and Prévost C (2015) An Integrative Approach to the Study of Filamentous Oligomeric Assemblies, with Application to RecA. PLOS ONE 10(3): e0116414. https://doi.org/10.1371/journal.pone.0116414
  2. A. Saladin, S. Fiorucci, P. Poulain, C. Prévost and M. Zacharias (2009). PTools: an opensource molecular docking library. BMC Structural Biology 9, 27-37 https://doi.org/10.1186/1472-6807-9-27
  3. David Sehnal, Sebastian Bittrich, Mandar Deshpande, Radka Svobodová, Karel Berka, Václav Bazgier, Sameer Velankar, Stephen K Burley, Jaroslav Koča, Alexander S Rose. (2021) Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Research, Volume 49, Issue W1, 2 July 2021, Pages W431–W437 https://doi.org/10.1093/nar/gkab314